我有一个结构如下所示的 XML 文件(为了这个问题的目的而简化)。对于每条记录,我想提取文章标题和“ArticleId”元素中包含DOI编号的属性“IdType”的值(有时这个属性可能会丢失),然后将文章标题存储在带有DOI的字典中作为关键。
<PubmedArticleSet>
<PubmedArticle>
<MedlineCitation Status="MEDLINE" Owner="NLM">
<Article PubModel="Print-Electronic">
<ArticleTitle>Malathion and dithane induce DNA damage in Vicia faba.</ArticleTitle>
</Article>
</MedlineCitation>
<PubmedData>
<ArticleIdList>
<ArticleId IdType="pubmed">28950791</ArticleId>
<ArticleId IdType="doi">10.1177/0748233717726877</ArticleId>
</ArticleIdList>
</PubmedData>
</PubmedArticle>
为了实现这一点,我使用了 xml.etree.ElementTree,如下所示:
import xml.etree.ElementTree as ET
xmldoc = ET.parse('sample.xml')
root = xmldoc.getroot()
pubs = {}
for elem in xmldoc.iter(tag='ArticleTitle'):
title = elem.text
for subelem in xmldoc.iter(tag='ArticleId'):
if subelem.get("IdType") == "doi":
doi = subelem.text
pubs[doi] = title
if len(pubs) == 0:
print "No articles found"
else:
for pub in pubs.keys():
print pub + ' ' + pubs[pub]
但是遍历文档树的循环有问题,因为上面的代码导致:
10.1177/0748233717726877 [Influence of Four Kinds of PPCPs on Micronucleus Rate of the Root-Tip Cells of Vicia-faba and Garlic].
10.1016/j.crvi.2015.02.001 [Influence of Four Kinds of PPCPs on Micronucleus Rate of the Root-Tip Cells of Vicia-faba and Garlic].
也就是说,我得到了正确的 DOI,但只是上一篇文章标题的副本,没有 DOI!
正确的输出应该是:
10.1177/0748233717726877 Malathion and dithane induce DNA damage in Vicia faba.
10.1016/j.crvi.2015.02.001 Impact of dual inoculation with Rhizobium and PGPR on growth and antioxidant status of Vicia faba L. under copper stress.
任何人都可以向我提供一些解决这个烦人问题的提示吗?
相关分类